Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
29
snATAC-seq
19
DNase-seq
17
pCHi-C
7
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
264
DNA binding
249
DNA accessibility
55
DNA methylation
6
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
22
October, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
585
bigWig
578
bam
382
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
1021
Homo sapiens
Biosample type
2475
tissue
1021
primary cell
643
cell line
392
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
343
pancreas
39
connective tissue
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
522
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
599
hg19
508
GRCh38
Lab
487
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
spinal cord
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
1021 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 86 more…
See all biosamples
Download