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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
56
total RNA-seq
44
ATAC-seq
8
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
62
Transcription
53
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
6
August, 2021
4
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
170
bam
139
bigWig
126
bed narrowPeak
78
bigBed narrowPeak
63
tsv
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
218
Homo sapiens
Biosample type
126
tissue
66
cell line
26
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
218
AMP
Genome assembly (visualization)
178
GRCh38
150
hg19
Lab
218
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
kidney
spinal cord
month_released!
July, 2019
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
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