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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
6
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
71
DNA binding
12
Transcription
9
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
control
3
RNA binding protein
3
transcription factor
Date released
40
October, 2019
36
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
2
February, 2020
2
June, 2019
2
November, 2017
Available data
86
bam
84
bigWig
75
bed narrowPeak
73
bigBed narrowPeak
13
tsv
10
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
100
Homo sapiens
Biosample type
75
tissue
25
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
heart
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
86
hg19
79
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
kidney
heart
target.investigated_as!
control
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
18
2
1
1
aorta
11
4
1
1
2
1
ascending aorta
13
1
2
thoracic aorta
12
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
15
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
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