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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
647
ChIP-seq
308
total RNA-seq
125
ATAC-seq
71
single cell RNA-seq
52
WGBS
11
DNase-seq
11
Hi-C
6
MeRIP-seq
4
RRBS
3
pCHi-C
3
small RNA-seq
2
Capture-C
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
125
DNA accessibility
Date released
59
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
4
August, 2017
3
September, 2020
2
March, 2020
1
February, 2021
1
November, 2019
1
October, 2019
Available data
58
bed narrowPeak
55
bigWig
39
zippedFastqFolder
33
fastq
26
bam
23
bigBed narrowPeak
1
bed bed3
1
tsv
Organism
125
Homo sapiens
Biosample type
72
primary cell
33
tissue
20
cell line
Organ
152
pancreas
103
epithelium
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
76
AMP
49
HPAP
Genome assembly (visualization)
60
hg19
36
GRCh38
Lab
56
AMP-T2D consortium
49
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
Audit category:
20
inconsistent ontology term
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
125 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
tissue
liver
20
pigmented layer of retina
12
right lobe of liver
1
cell line
EndoC_BH1
19
HepG2
1
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