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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
37
total RNA-seq
31
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
37
DNA binding
37
Transcription
31
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
26
May, 2021
19
December, 2017
16
November, 2019
15
February, 2023
6
November, 2020
5
March, 2020
2
August, 2021
Available data
73
bam
68
bigWig
44
bed narrowPeak
38
tsv
19
fastq
14
bigBed narrowPeak
3
tagAlign
1
bedpe bed3+
1
hic
Organism
114
Homo sapiens
Biosample type
primary cell
77
cell line
24
in vitro differentiated cells
14
tissue
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
4
T1D
Genome assembly (visualization)
82
hg19
67
GRCh38
Lab
109
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
kidney
biosample_type!
primary cell
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
15
33
19
6
2
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
12
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