Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
213
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
Assay category
430
Transcription
234
DNA accessibility
213
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
184
histone
184
histone modification
98
broad histone mark
86
narrow histone mark
32
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
24
July, 2019
10
October, 2019
8
January, 2021
7
August, 2020
7
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
585
bigWig
578
bam
409
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
959
Homo sapiens
Biosample type
2002
tissue
959
primary cell
377
in vitro differentiated cells
286
cell line
10
stem cell
Organ
345
epithelium
324
pancreas
24
connective tissue
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
430
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
511
hg19
419
GRCh38
Lab
395
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
kidney
target.investigated_as!
nucleotide modification
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
959 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
12
29
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
12
16
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 83 more…
See all biosamples
Download