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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
Assay category
18
DNA binding
Target of assay
1015
histone modification
1014
histone
512
narrow histone mark
501
broad histone mark
455
transcription factor
337
control
101
RNA binding protein
89
recombinant protein
18
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
3
August, 2017
3
December, 2017
1
November, 2018
Available data
18
bam
18
bed narrowPeak
18
bigWig
18
fastq
16
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
18
Homo sapiens
Biosample type
12
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
15
liver
10
blood
bodily fluid
2
connective tissue
1
epithelium
Project
18
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
13
inconsistent control read length
inconsistent control run_type
organ_slims!
large intestine
bodily fluid
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
cell line
HepG2
12
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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