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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
47
DNA binding
Target of assay
24
histone
24
histone modification
23
transcription factor
14
broad histone mark
12
chromatin remodeller
10
narrow histone mark
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
11
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
47
bam
47
bed narrowPeak
47
bigWig
47
fastq
28
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
9
tagAlign
Organism
47
Homo sapiens
Biosample type
22
cell line
17
in vitro differentiated cells
6
tissue
primary cell
2
stem cell
Organ
23
liver
6
connective tissue
5
pancreas
3
embryo
1
epithelium
Project
47
AMP
Genome assembly (visualization)
51
hg19
47
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
47
inconsistent control read length
6
inconsistent control run_type
2
inconsistent assembly
organ_slims!
large intestine
biosample_type!
primary cell
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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