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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
67
ATAC-seq
31
total RNA-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
76
DNA accessibility
71
DNA binding
31
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
37
narrow histone mark
15
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
52
October, 2019
44
August, 2017
24
May, 2022
20
November, 2019
18
February, 2023
6
September, 2017
5
March, 2019
5
March, 2020
4
January, 2021
4
July, 2018
4
November, 2020
1
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
342
bam
300
bigWig
tsv
153
fastq
59
bed narrowPeak
21
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
190
Homo sapiens
Biosample type
190
tissue
Organ
141
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
164
AMP
26
T1D
Genome assembly (visualization)
77
hg19
48
GRCh38
Lab
133
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
organ_slims!
large intestine
files.file_type!
tsv
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
71
67
31
7
4
4
3
1
1
1
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