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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
total RNA-seq
29
ChIP-seq
3
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
266
Transcription
29
DNA binding
5
DNA accessibility
Target of assay
22
histone
22
histone modification
12
narrow histone mark
10
broad histone mark
7
transcription factor
2
RNA binding protein
Date released
118
August, 2017
116
July, 2018
36
May, 2021
19
November, 2019
6
April, 2018
4
March, 2020
1
October, 2017
Available data
342
bam
300
bigWig
268
tsv
153
fastq
59
bed narrowPeak
21
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
300
Homo sapiens
Biosample type
300
tissue
Organ
300
pancreas
Project
298
AMP
2
T1D
Genome assembly (visualization)
300
hg19
291
GRCh38
Lab
299
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
organ_slims!
large intestine
BIOSAMPLE
ASSAY
300 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
266
29
3
1
1
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