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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
199
Transcription
123
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
40
September, 2018
33
April, 2018
33
July, 2018
32
February, 2021
20
May, 2021
19
September, 2020
14
June, 2019
13
July, 2019
11
October, 2019
7
August, 2020
6
December, 2019
6
November, 2020
5
March, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
November, 2019
3
October, 2022
2
August, 2021
2
October, 2018
1
June, 2018
Available data
198
bigWig
186
bam
185
fastq
154
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
392
Homo sapiens
Biosample type
314
primary cell
64
cell line
15
tissue
in vitro differentiated cells
Organ
728
pancreas
501
connective tissue
417
adipose tissue
393
epithelium
302
kidney
258
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
239
AMP
152
HPAP
2
T1D
Genome assembly (visualization)
208
hg19
195
GRCh38
Lab
235
AMP-T2D consortium
152
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
65
inconsistent ontology term
5
audit script error
organ_slims!
large intestine
biosample_type!
in vitro differentiated cells
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
393 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
+ See 19 more…
cell line
EndoC_BH1
33
19
1
6
2
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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