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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
total RNA-seq
187
single cell RNA-seq
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
766
DNA binding
553
Transcription
319
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
Date released
91
February, 2021
76
February, 2023
59
May, 2021
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
18
July, 2019
17
August, 2021
6
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
4
March, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
1
November, 2019
Available data
365
tsv
358
bigWig
356
bam
253
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
549
Homo sapiens
Biosample type
tissue
436
primary cell
in vitro differentiated cells
115
cell line
2
stem cell
Organ
197
epithelium
188
pancreas
56
heart
54
artery
54
blood vessel
54
vasculature
19
liver
15
connective tissue
10
kidney
8
embryo
3
brain
2
adipose tissue
2
musculature of body
1
pericardium
Project
274
AMP
177
HPAP
98
T1D
4
community
Genome assembly (visualization)
358
hg19
356
GRCh38
Lab
265
AMP-T2D consortium
177
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
9
Bing Ren, UCSD
4
Anna Gloyn, Oxford
Audit category:
47
inconsistent ontology term
organ_slims!
large intestine
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
553 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
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cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
EndoC-BH1
1
1
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stem cell
SB Ad3.1
1
1
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