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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
6
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
Assay category
28
DNA accessibility
6
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
1
control
Date released
24
June, 2019
4
July, 2019
4
October, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
1
November, 2020
Available data
1194
bam
1138
bigWig
840
fastq
701
bed narrowPeak
464
bigBed narrowPeak
393
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
43
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
43
Homo sapiens
Biosample type
tissue
37
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
21
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
7
liver
6
blood vessel
3
heart
2
pancreas
2
vein
1
eye
1
musculature of body
Project
43
AMP
Genome assembly (visualization)
36
hg19
35
GRCh38
Lab
41
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
organ_slims!
large intestine
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
43 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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