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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
DNase-seq
34
ChIP-seq
2
pCHi-C
2
total RNA-seq
Assay category
171
DNA accessibility
34
DNA binding
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
154
June, 2019
26
August, 2017
9
November, 2018
7
October, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
November, 2020
Available data
3044
bam
2837
bigWig
1625
bed narrowPeak
1459
tsv
1214
fastq
978
bigBed narrowPeak
343
tagAlign
275
bed broadPeak
251
bigBed broadPeak
209
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
8
csv
7
bed bed3
4
tar
1
tagAlign bed3+
1
vcf
Organism
209
Homo sapiens
Biosample type
172
tissue
32
primary cell
in vitro differentiated cells
3
stem cell
2
cell line
Organ
78
kidney
36
limb
musculature of body
32
brain
30
heart
28
pancreas
19
epithelium
18
ureter
13
connective tissue
12
liver
11
vasculature
9
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
209
AMP
Genome assembly (visualization)
205
GRCh38
186
hg19
Lab
207
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
large intestine
musculature of body
biosample_type!
in vitro differentiated cells
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
209 results
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DNase-seq
ChIP-seq
pCHi-C
total RNA-seq
tissue
islet of Langerhans
21
heart
18
brain
14
kidney
13
renal cortex interstitium
11
+ See 37 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 17 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
See all biosamples
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