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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
34
ChIP-seq
4
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
34
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
26
August, 2017
9
November, 2018
7
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
3098
bam
2906
bigWig
1682
bed narrowPeak
1468
tsv
1214
fastq
1022
bigBed narrowPeak
356
tagAlign
319
bed broadPeak
283
bigBed broadPeak
247
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
247
Homo sapiens
Biosample type
205
tissue
37
primary cell
in vitro differentiated cells
3
stem cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
28
pancreas
21
epithelium
18
ureter
14
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
247
AMP
Genome assembly (visualization)
238
GRCh38
224
hg19
Lab
245
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
inconsistent assembly
organ_slims!
large intestine
biosample_type!
in vitro differentiated cells
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
247 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
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