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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1639
ChIP-seq
1395
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
49
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
7
DNase-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1395
Transcription
Date released
523
February, 2021
190
May, 2020
120
July, 2018
96
May, 2021
89
August, 2017
89
February, 2023
67
August, 2021
44
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
13
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1194
tsv
1161
bam
1157
bigWig
228
fastq
59
txt
bed bed3+
Organism
1395
Homo sapiens
Biosample type
1037
tissue
245
primary cell
in vitro differentiated cells
113
cell line
Organ
465
connective tissue
403
pancreas
398
adipose tissue
189
liver
129
epithelium
71
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1198
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1156
GRCh38
1156
hg19
Lab
1116
AMP-T2D consortium
108
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
organ_slims!
large intestine
files.file_type!
bed bed3+
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1395 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone tissue
58
kidney
49
+ See 47 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 45 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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