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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
238
DNA binding
89
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
175
histone modification
174
histone
99
broad histone mark
74
narrow histone mark
48
control
15
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
713
February, 2021
397
May, 2021
396
November, 2017
353
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
78
December, 2017
76
November, 2018
76
October, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
fastq
243
bam
233
bigWig
141
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
346
Homo sapiens
Biosample type
250
tissue
56
in vitro differentiated cells
47
primary cell
Organ
157
pancreas
101
connective tissue
51
liver
45
adipose tissue
29
epithelium
26
musculature of body
Project
353
AMP
Genome assembly (visualization)
218
hg19
191
GRCh38
Lab
353
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
large intestine
files.file_type!
bed bed3+
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
353 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
23
89
1
1
liver
45
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
55
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
See all biosamples
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