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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
188
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
28
transcription factor
27
control
6
RNA binding protein
3
chromatin remodeller
Date released
681
February, 2021
406
November, 2017
341
May, 2020
336
May, 2021
310
August, 2021
290
October, 2019
209
August, 2017
145
February, 2023
118
May, 2019
98
July, 2019
95
May, 2022
80
April, 2019
79
December, 2017
74
November, 2018
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
5
March, 2023
5
November, 2020
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
209
Homo sapiens
Biosample type
130
tissue
61
in vitro differentiated cells
18
primary cell
Organ
pancreas
114
connective tissue
53
adipose tissue
51
liver
29
epithelium
26
musculature of body
Project
209
AMP
Genome assembly (visualization)
103
hg19
83
GRCh38
Lab
209
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
large intestine
pancreas
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
45
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
8
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
60
1
primary cell
skeletal muscle myoblast
15
1
2
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