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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
505
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
505
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
50
November, 2018
40
May, 2022
32
August, 2017
31
August, 2021
9
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
737
Homo sapiens
Biosample type
391
cell line
330
tissue
8
in vitro differentiated cells
8
primary cell
Organ
845
pancreas
737
liver
613
connective tissue
465
adipose tissue
460
epithelium
306
heart
261
kidney
181
brain
178
vasculature
174
blood vessel
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
42
musculature of body
31
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
737
AMP
Genome assembly (visualization)
583
hg19
493
GRCh38
Lab
667
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
large intestine
files.file_type!
bed bed3+
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
737 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
1
1
tissue
liver
120
167
20
3
1
1
1
1
1
right lobe of liver
7
3
1
1
2
1
in vitro differentiated cells
hepatocyte
8
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
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