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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
20
Hi-C
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
20
3D chromatin structure
4
DNA accessibility
Date released
89
February, 2021
59
August, 2021
8
March, 2020
7
February, 2023
7
May, 2022
4
October, 2022
3
October, 2019
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1531
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
180
Homo sapiens
Biosample type
167
tissue
7
in vitro differentiated cells
4
primary cell
3
cell line
Organ
88
bone element
63
kidney
13
pancreas
6
epithelium
4
skeleton
3
blood vessel
3
heart
3
musculature of body
vasculature
2
liver
2
vein
Project
177
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
108
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
90
inconsistent ontology term
9
audit script error
organ_slims!
large intestine
vasculature
BIOSAMPLE
ASSAY
181 results
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RNA microarray
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
2
psoas muscle
2
acetabular part of hip bone
1
+ See 9 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
MIN6
1
See all biosamples
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