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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
19
single cell RNA-seq
17
WGBS
Assay category
36
DNA methylation
19
Transcription
Date released
May, 2022
23
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
Available data
3368
bam
3149
bigWig
1779
bed narrowPeak
1599
tsv
1334
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
55
Homo sapiens
Biosample type
29
primary cell
25
tissue
1
cell line
Organ
8
heart
6
epithelium
6
pancreas
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
36
AMP
19
HPAP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
36
AMP-T2D consortium
19
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
organ_slims!
large intestine
month_released!
May, 2022
BIOSAMPLE
ASSAY
55 results
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RRBS
single cell RNA-seq
WGBS
primary cell
Langerhans cell
19
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
See all biosamples
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