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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
61
DNA binding
9
Transcription
5
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
47
histone
47
histone modification
29
broad histone mark
18
narrow histone mark
12
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
17
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
1
February, 2020
1
November, 2017
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
10
tsv
9
bed broadPeak
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
80
Homo sapiens
Biosample type
59
tissue
21
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
58
hg19
52
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
large intestine
artery
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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