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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
Assay category
105
DNA binding
Target of assay
739
histone modification
738
histone
504
transcription factor
387
broad histone mark
350
narrow histone mark
284
control
105
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
8
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
4
April, 2019
4
May, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
97
bigWig
96
bed narrowPeak
94
bam
85
bigBed narrowPeak
84
fastq
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
1
tar
Organism
105
Homo sapiens
Biosample type
64
cell line
28
tissue
9
in vitro differentiated cells
4
primary cell
Organ
58
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
brain
3
kidney
1
artery
1
eye
Project
105
AMP
Genome assembly (visualization)
91
GRCh38
91
hg19
Lab
94
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
large intestine
brain
epithelium
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
primary cell
skeletal muscle myoblast
2
cardiac fibroblast
1
cardiac muscle cell
1
See all biosamples
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