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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
588
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
588
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
176
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
89
May, 2019
63
July, 2019
62
April, 2019
57
November, 2017
38
May, 2021
35
May, 2024
34
December, 2017
34
October, 2018
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1884
bam
1745
bigWig
1075
tsv
958
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1739
Homo sapiens
Biosample type
1745
tissue
603
primary cell
459
cell line
253
in vitro differentiated cells
3
stem cell
Organ
476
connective tissue
418
adipose tissue
365
pancreas
263
liver
202
brain
147
heart
91
kidney
91
limb
67
blood vessel
67
vasculature
58
bone element
57
musculature of body
31
nerve
26
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1743
AMP
2
T1D
Genome assembly (visualization)
1685
GRCh38
1625
hg19
Lab
1689
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
large intestine
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1745 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
27
1
3
1
liver
147
81
2
20
1
bone tissue
58
heart
4
12
18
1
1
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