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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
159
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
376
DNA binding
162
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
236
November, 2017
170
May, 2020
46
December, 2017
33
November, 2018
20
May, 2022
18
August, 2017
16
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
March, 2020
Available data
624
bam
566
bigWig
408
fastq
385
bed narrowPeak
303
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
566
Homo sapiens
Biosample type
280
cell line
263
tissue
12
in vitro differentiated cells
11
primary cell
Organ
614
pancreas
566
liver
560
connective tissue
420
adipose tissue
293
epithelium
219
brain
213
heart
150
vasculature
146
blood vessel
129
kidney
91
limb
84
artery
68
musculature of body
58
bone element
45
blood
45
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
5
eye
1
pericardium
1
pituitary gland
Project
566
AMP
Genome assembly (visualization)
562
hg19
477
GRCh38
Lab
533
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
organ_slims!
large intestine
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
566 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
274
5
1
tissue
liver
81
147
20
2
1
right lobe of liver
6
2
1
1
2
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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