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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
1
pCHi-C
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
July, 2019
3
February, 2020
1
May, 2021
Available data
113
bam
92
bed narrowPeak
90
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
Organism
118
Homo sapiens
Biosample type
117
tissue
1
primary cell
Organ
931
pancreas
723
liver
656
connective tissue
503
epithelium
474
adipose tissue
357
heart
340
kidney
265
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
117
limb
86
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
1
T1D
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
117
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
large intestine
target.investigated_as!
RNA binding protein
month_released!
July, 2019
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
distal epiphysis of femur
1
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primary cell
megakaryocyte
1
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