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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
37
ATAC-seq
6
single cell RNA-seq
6
total RNA-seq
3
DNase-seq
2
WGBS
1
pCHi-C
Assay category
50
DNA binding
40
DNA accessibility
12
Transcription
2
DNA methylation
3D chromatin structure
Target of assay
36
histone
36
histone modification
22
broad histone mark
14
narrow histone mark
11
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
7
July, 2019
6
August, 2021
3
June, 2019
2
February, 2020
2
March, 2020
Available data
79
bed narrowPeak
61
bam
49
bigWig
42
bigBed narrowPeak
13
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
105
tissue
66
cell line
27
primary cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
360
liver
310
heart
298
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
Genome assembly (visualization)
84
GRCh38
48
hg19
Lab
105
AMP-T2D consortium
organ_slims!
limb
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
5
36
1
2
aorta
13
4
1
2
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
pulmonary artery
2
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