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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
15
RRBS
15
small RNA-seq
11
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
53
Transcription
26
DNA methylation
8
DNA accessibility
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
323
February, 2021
315
August, 2021
239
October, 2019
204
February, 2023
200
May, 2022
185
June, 2019
168
July, 2018
113
May, 2019
94
December, 2017
87
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
58
November, 2019
53
March, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
4
March, 2019
4
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
69
bam
68
bigWig
53
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
2
bigBed narrowPeak
Organism
87
Homo sapiens
Biosample type
62
tissue
25
primary cell
Organ
25
heart
17
connective tissue
15
brain
adipose tissue
11
epithelium
11
kidney
10
vasculature
9
blood vessel
9
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
limb
Project
87
AMP
Genome assembly (visualization)
75
hg19
66
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
limb
adipose tissue
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
RRBS
small RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
heart
2
1
1
frontal cortex
1
1
1
+ See 22 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 15 more…
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