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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
500
ATAC-seq
170
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1718
Transcription
1213
DNA binding
759
DNA accessibility
89
DNA methylation
26
3D chromatin structure
Date released
153
June, 2019
105
February, 2023
100
May, 2020
82
August, 2021
79
May, 2022
42
February, 2021
34
May, 2021
26
November, 2019
26
October, 2019
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
9
August, 2017
8
July, 2019
8
October, 2017
7
August, 2020
7
November, 2018
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
420
bed narrowPeak
337
bam
286
bigWig
199
bigBed narrowPeak
168
bed bed3+
167
bed broadPeak
165
bigBed broadPeak
98
fastq
64
xls
60
zippedFastqFolder
14
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
758
Homo sapiens
Biosample type
401
tissue
285
primary cell
43
in vitro differentiated cells
30
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
623
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
389
GRCh38
381
hg19
Lab
509
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
44
inconsistent ontology term
29
audit script error
organ_slims!
limb
liver
BIOSAMPLE
ASSAY
759 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
heart
18
retina
15
3
+ See 46 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 55 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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