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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
DNase-seq
113
ATAC-seq
5
FAIRE-seq
Assay category
1236
Transcription
910
DNA binding
286
DNA accessibility
15
DNA methylation
4
3D chromatin structure
Date released
153
June, 2019
45
May, 2020
14
September, 2018
9
August, 2017
8
July, 2019
8
October, 2017
8
October, 2019
7
August, 2020
7
November, 2018
5
May, 2021
5
September, 2017
4
March, 2020
3
February, 2023
3
January, 2018
3
September, 2020
2
August, 2021
1
February, 2021
1
November, 2020
Available data
420
bed narrowPeak
337
bam
286
bigWig
199
bigBed narrowPeak
168
bed bed3+
167
bed broadPeak
165
bigBed broadPeak
98
fastq
64
xls
60
zippedFastqFolder
14
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
286
Homo sapiens
Biosample type
162
tissue
106
primary cell
13
in vitro differentiated cells
5
cell line
Organ
80
kidney
52
epithelium
51
pancreas
limb
35
brain
34
heart
34
musculature of body
liver
18
connective tissue
18
ureter
15
vasculature
13
blood vessel
6
adipose tissue
6
artery
4
eye
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
276
AMP
10
HPAP
Genome assembly (visualization)
251
hg19
214
GRCh38
Lab
265
AMP-T2D consortium
10
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
10
inconsistent ontology term
organ_slims!
limb
liver
BIOSAMPLE
ASSAY
286 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
brain
14
kidney
13
1
renal cortex interstitium
11
renal pelvis
10
+ See 37 more…
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 45 more…
in vitro differentiated cells
embryonic stem cell
6
adipocyte
1
3
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
cell line
EndoC_BH1
2
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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