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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
pCHi-C
1
Hi-C
Assay category
1
3D chromatin structure
Date released
2
March, 2020
1
March, 2019
Available data
3278
bam
3078
bigWig
1725
bed narrowPeak
1593
tsv
1358
fastq
958
bigBed narrowPeak
398
tagAlign
286
bed broadPeak
249
bigBed broadPeak
235
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
tissue
Organ
1
pancreas
Project
3
AMP
Genome assembly (visualization)
3
hg19
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
limb
assay_title!
Capture-C
BIOSAMPLE
ASSAY
3 results
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pCHi-C
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
tissue
islet of Langerhans
1
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