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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
134
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
DNase-seq
1
pCHi-C
Assay category
198
DNA binding
136
Transcription
42
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
288
bam
256
bigWig
140
fastq
131
bed narrowPeak
127
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
Organism
385
Homo sapiens
Biosample type
2473
tissue
1056
primary cell
649
cell line
385
in vitro differentiated cells
6
stem cell
Organ
96
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
385
AMP
Genome assembly (visualization)
290
hg19
262
GRCh38
4
hg18
Lab
331
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
limb
assay_title!
DNase-seq
month_released!
March, 2020
BIOSAMPLE
ASSAY
385 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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