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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
174
single cell RNA-seq
132
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
12
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
306
Transcription
298
DNA binding
135
DNA accessibility
22
DNA methylation
12
3D chromatin structure
Target of assay
167
control
132
histone
132
histone modification
71
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
93
February, 2021
66
May, 2022
64
October, 2019
60
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
November, 2017
22
February, 2020
21
May, 2019
19
April, 2020
16
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
186
bam
157
txt
156
tsv
122
tagAlign
100
bed narrowPeak
97
fastq
59
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
889
Homo sapiens
Biosample type
892
tissue
552
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
797
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1659
hg19
Lab
658
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
organ_slims!
limb
assembly!
GRCh38
BIOSAMPLE
ASSAY
892 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
45
32
46
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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