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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
total RNA-seq
481
ChIP-seq
125
DNase-seq
114
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
914
Transcription
481
DNA binding
244
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
390
histone modification
389
histone
225
narrow histone mark
164
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
446
February, 2021
180
August, 2017
170
May, 2020
116
July, 2018
115
June, 2019
111
October, 2019
87
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1557
bigWig
1552
bam
914
tsv
685
bed narrowPeak
409
bigBed narrowPeak
294
fastq
160
bed broadPeak
153
bed bed3+
124
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1653
Homo sapiens
Biosample type
1659
tissue
628
primary cell
530
cell line
266
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1657
AMP
2
T1D
Genome assembly (visualization)
1763
GRCh38
1659
hg19
Lab
1616
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
month_released!
February, 2018
BIOSAMPLE
ASSAY
1659 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
42
2
1
6
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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