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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
113
DNA binding
99
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
86
histone
86
histone modification
54
broad histone mark
32
narrow histone mark
22
control
5
RNA binding protein
5
transcription factor
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
December, 2017
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
137
bam
134
zippedFastqFolder
129
bed narrowPeak
111
bigWig
91
bigBed narrowPeak
24
fastq
7
txt
1
bed bed3+
Organism
313
Homo sapiens
Biosample type
174
tissue
139
primary cell
Organ
106
pancreas
85
epithelium
50
blood vessel
50
vasculature
40
liver
28
brain
21
heart
9
musculature of body
limb
5
artery
5
kidney
Project
179
AMP
134
HPAP
Genome assembly (visualization)
130
hg19
91
GRCh38
Lab
134
Klaus Kaestner, Upenn
115
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
organ_slims!
limb
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
313 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 8 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
kidney epithelial cell
5
pancreatic acinar cell
4
See all biosamples
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