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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
WGBS
21
RRBS
1
DNAme array
Assay category
1911
Transcription
1805
DNA binding
787
DNA accessibility
96
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
26
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
35
bed bedMethyl
35
bigBed bedMethyl
21
fastq
17
bam
16
bigWig
6
tsv
Organism
96
Homo sapiens
Biosample type
58
primary cell
37
tissue
1
cell line
Organ
53
epithelium
53
pancreas
10
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
limb
1
pericardium
Project
49
AMP
47
HPAP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
49
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
organ_slims!
limb
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
96 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 8 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 12 more…
cell line
HepG2
1
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