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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1166
total RNA-seq
1039
ChIP-seq
294
ATAC-seq
176
single cell RNA-seq
143
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
26
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1358
Transcription
1039
DNA binding
469
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
691
histone modification
690
histone
364
narrow histone mark
325
broad histone mark
207
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
565
February, 2021
352
August, 2017
271
August, 2021
193
May, 2020
181
October, 2019
172
May, 2021
131
June, 2019
120
July, 2018
111
February, 2023
108
May, 2019
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2084
bam
1940
bigWig
1200
tsv
1024
bed narrowPeak
518
fastq
494
bigBed narrowPeak
278
tagAlign
194
bed bed3+
178
bed broadPeak
160
txt
141
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3040
Homo sapiens
Biosample type
2655
tissue
1088
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2952
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2028
GRCh38
1956
hg19
4
hg18
Lab
2643
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
205
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
3049 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
298
70
68
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 163 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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