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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
9
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
46
DNA accessibility
9
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
3
July, 2019
3
May, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
74
bam
62
bigWig
57
tsv
51
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
66
cell line
44
tissue
2
primary cell
Organ
795
pancreas
687
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
112
AMP-T2D consortium
organ_slims!
limb
audit.ERROR.category!
inconsistent replicate
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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