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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
26
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
18
August, 2021
16
May, 2021
10
February, 2021
6
February, 2023
6
November, 2020
4
March, 2020
2
March, 2023
2
November, 2019
1
December, 2018
1
May, 2020
1
October, 2022
Available data
119
tsv
117
bam
bigWig
12
bed narrowPeak
7
fastq
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
63
Homo sapiens
Biosample type
700
tissue
443
primary cell
67
cell line
52
in vitro differentiated cells
6
stem cell
Organ
27
epithelium
27
pancreas
17
liver
8
artery
8
blood vessel
8
heart
8
vasculature
4
kidney
1
mammary gland
Project
60
AMP
5
T1D
2
community
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
38
AMP-T2D consortium
16
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
29
inconsistent ontology term
1
inconsistent replicate
organ_slims!
limb
assay_title!
ChIP-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
17
6
3
1
2
2
1
HepG2
1
9
2
2
2
1
smooth muscle cell of the coronary artery
8
EndoC-BH1
1
1
HEK293T
2
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