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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
74
control
65
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
10
November, 2019
October, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
31
bigWig
29
bed narrowPeak
28
bam
16
fastq
14
bed broadPeak
14
bigBed broadPeak
14
bigBed narrowPeak
11
tagAlign
Organism
31
Homo sapiens
Biosample type
453
tissue
216
primary cell
112
in vitro differentiated cells
31
cell line
2
stem cell
Organ
18
liver
12
epithelium
12
pancreas
1
blood
1
bodily fluid
Project
29
AMP
2
T1D
Genome assembly (visualization)
31
hg19
26
GRCh38
Lab
28
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
limb
month_released!
October, 2019
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
18
EndoC_BH1
12
GM12878
1
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