Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
507
ChIP-seq
200
ATAC-seq
141
DNase-seq
4
FAIRE-seq
Assay category
507
DNA binding
345
DNA accessibility
Target of assay
437
histone modification
436
histone
237
narrow histone mark
199
broad histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
131
June, 2019
103
October, 2019
87
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
7
July, 2019
6
January, 2019
3
December, 2018
2
February, 2021
2
March, 2020
Available data
1793
bam
1641
bigWig
1069
tsv
852
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
846
Homo sapiens
Biosample type
852
tissue
404
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
153
kidney
133
heart
123
pancreas
113
liver
100
blood vessel
100
vasculature
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
850
AMP
2
T1D
Genome assembly (visualization)
752
GRCh38
685
hg19
Lab
750
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
BIOSAMPLE
ASSAY
852 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
+ See 119 more…
See all biosamples
Download