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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
727
ChIP-seq
575
total RNA-seq
246
ATAC-seq
174
single cell RNA-seq
140
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
20
WGBS
14
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
763
Transcription
727
DNA binding
418
DNA accessibility
31
DNA methylation
12
3D chromatin structure
Target of assay
511
histone modification
510
histone
281
narrow histone mark
229
broad histone mark
146
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
227
August, 2017
193
May, 2020
171
October, 2019
130
June, 2019
120
July, 2018
108
May, 2019
95
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
62
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
39
March, 2020
39
November, 2019
25
November, 2018
22
October, 2017
20
February, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1295
bam
1160
bigWig
839
bed narrowPeak
612
tsv
467
bigBed narrowPeak
334
fastq
230
tagAlign
174
bed broadPeak
163
bed bed3+
157
txt
138
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2060
Homo sapiens
Biosample type
2068
tissue
1049
primary cell
662
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1971
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1243
GRCh38
1177
hg19
Lab
1756
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
connective tissue
BIOSAMPLE
ASSAY
2068 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
69
298
68
1
7
4
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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