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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
718
ChIP-seq
213
ATAC-seq
115
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
18
WGBS
15
small RNA-seq
10
RRBS
9
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1111
Transcription
718
DNA binding
360
DNA accessibility
28
DNA methylation
9
3D chromatin structure
Target of assay
484
histone modification
483
histone
271
narrow histone mark
212
broad histone mark
154
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
193
May, 2020
165
October, 2019
137
August, 2021
120
July, 2018
104
June, 2019
87
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
52
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
19
April, 2020
19
February, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1661
bam
1524
bigWig
958
tsv
719
bed narrowPeak
389
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
150
bed broadPeak
142
bed bed3+
113
bigBed broadPeak
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2333
Homo sapiens
Biosample type
2342
tissue
1075
primary cell
596
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2245
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1572
GRCh38
1546
hg19
Lab
2030
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
heart
BIOSAMPLE
ASSAY
2342 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
70
68
1
7
4
1
3
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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