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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
32
DNA binding
8
Transcription
5
DNA methylation
2
3D chromatin structure
1
DNA accessibility
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
10
June, 2019
5
July, 2019
5
March, 2020
1
February, 2020
1
January, 2018
1
May, 2022
Available data
29
bigWig
22
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
49
Homo sapiens
Biosample type
36
tissue
13
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
33
hg19
14
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
limb
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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