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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
8
Transcription
3
DNA accessibility
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
24
August, 2017
11
June, 2019
5
July, 2019
5
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
29
bigWig
22
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
49
Homo sapiens
Biosample type
35
tissue
14
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
33
hg19
15
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
organ_slims!
limb
files.file_type!
fastq
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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