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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
DNase-seq
114
ChIP-seq
2
ATAC-seq
Assay category
171
DNA accessibility
114
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
155
June, 2019
70
November, 2017
40
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2987
bam
2779
bigWig
1553
bed narrowPeak
1462
tsv
1217
fastq
941
bigBed narrowPeak
358
tagAlign
285
bed broadPeak
248
bigBed broadPeak
212
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
279
Homo sapiens
Biosample type
177
tissue
59
cell line
49
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
285
AMP
Genome assembly (visualization)
261
hg19
245
GRCh38
Lab
283
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
limb
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
285 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
skeletal muscle tissue
13
renal cortex interstitium
11
+ See 39 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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