Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
147
ChIP-seq
95
ATAC-seq
69
single cell RNA-seq
51
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
147
DNA binding
100
DNA accessibility
51
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
104
May, 2022
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
544
Homo sapiens
Biosample type
338
primary cell
213
tissue
Organ
551
pancreas
465
liver
337
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
402
AMP
149
HPAP
Genome assembly (visualization)
363
hg19
357
GRCh38
Lab
376
AMP-T2D consortium
149
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
BIOSAMPLE
ASSAY
551 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
pancreatic beta cell
21
13
23
12
16
pancreatic acinar cell
4
8
9
9
pancreatic ductal cell
4
13
4
9
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
103
28
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
See all biosamples
Download