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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
5
RRBS
5
total RNA-seq
4
Hi-C
3
DNase-seq
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
49
DNA binding
8
Transcription
6
DNA accessibility
5
DNA methylation
4
3D chromatin structure
Target of assay
42
histone
42
histone modification
25
broad histone mark
17
narrow histone mark
7
control
Date released
26
August, 2017
21
October, 2019
11
June, 2019
6
March, 2020
5
July, 2019
2
May, 2022
1
February, 2020
1
January, 2018
Available data
44
bigWig
37
bam
35
bed narrowPeak
22
bigBed narrowPeak
18
bed broadPeak
15
tagAlign
8
tsv
5
bigBed broadPeak
4
bed bed3+
4
hic
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
2
fastq
1
tar
1
txt
Organism
73
Homo sapiens
Biosample type
37
tissue
36
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
336
heart
331
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
52
hg19
27
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
2
audit script error
organ_slims!
limb
month_released!
April, 2019
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
DNase-seq
small RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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