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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
138
ChIP-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
379
Transcription
270
DNA accessibility
138
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
narrow histone mark
47
broad histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
433
bam
418
bigWig
406
fastq
216
tsv
153
zippedFastqFolder
151
bed narrowPeak
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
29
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
851
Homo sapiens
Biosample type
2509
tissue
851
primary cell
575
cell line
262
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
473
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
419
hg19
369
GRCh38
Lab
473
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
limb
blood vessel
month_released!
May, 2021
BIOSAMPLE
ASSAY
851 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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