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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
single cell RNA-seq
11
WGBS
10
snATAC-seq
6
ATAC-seq
4
Hi-C
2
FAIRE-seq
Assay category
74
Transcription
26
DNA methylation
18
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
84
bigWig
81
bam
65
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
121
Homo sapiens
Biosample type
91
tissue
31
primary cell
Organ
25
heart
19
lung
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
limb
3
artery
2
pericardium
1
eye
Project
103
AMP
19
LungMap
Genome assembly (visualization)
91
hg19
78
GRCh38
Lab
103
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
122 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
single cell RNA-seq
WGBS
snATAC-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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